Fixed bug where locally deleted files were not being deleted from yadm

README.md

@@ -111,10 +111,6 @@ $ systemctl enable cronie
 $ systemctl start cronie
 ```
 
-## Known Issues
-
-- When tracked files are deleted, AutoYADM does not delete them from the repository, potentially resulting in conflicts if the repository is pulled/cloned to another machine.
-
 ## Feature Roadmap
 
 - [ ] Allow custom `tracked` file location & name

autoyadm.sh

@@ -40,6 +40,12 @@ fi
   fi
 done) <"$AUTOYADMDIR/tracked"
 
+# Now we also stage files already tracked by YADM
+# that have been renamed or deleted; since the above
+# loop will not stage them:
+
+yadm add -u
+
 # Define the location of the ssh-agent environment
 sshenv="$HOME/.ssh/environment-$HOST"
 if [[ -n $(yadm status --porcelain) ]]; then